SNP Profiles of EET 400 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	GG	TT	TT	TT	TT	CC	CC	AA	GG	CC	GG	TT
1._GC-01-066-4-02	CC	AA	GG	TT	TT	TT	TT	CC	CC	AA	GG	CC	GG	TT
2._GC-01-066-4-02	CC	AA	GG	TT	TT	TT	TT	CC	CC	AA	GG	CC	GG	TT
3._GC-01-066-4-02	CC	AA	GG	TT	TT	TT	TT	CC	CC	AA	GG	CC	GG	TT
4._EET_400_[ECU]	CC	AA	GG	TT	TT	TT	TT	CC	CC	AA	GG	CC	GG	TT
5._EET_400_[ECU]	CC	AA	GG	TT	TT	TT	TT	CC	CC	AA	GG	CC	GG	TT
6._GC-01-066-4-02	CC	AA	GG	TT	TT	TT	TT	CC	CC	AA	GG	CC	GG	TT
7._EET_400_[ECU]	CC	AA	GG	TT	TT	TT	TT	CC	CC	AA	GG	CC	GG	TT
8._GC-01-066-4-02	CC	AA	GG	TT	TT	TT	TT	CC	CC	AA	GG	CC	GG	TT
9._EET_400_[ECU]	CC	AA	GG	TT	TT	TT	TT	CC	CC	AA	GG	CC	GG	TT
10._EET_400_[ECU]	CC	AG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AG	CT
11._RUQ_760	CC	AG	CC	TT	CT	TT	GT	CT	CC	AA	GG	CC	AG	TT
12._EET_400_[ECU]	CC	AG	CC	TT	CT	TT	GT	CT	CC	AA	GG	CC	AA	TT
13._GC-01-066-4-02	CC	AG	CC	TT	CT	TT	GT	CT	CC	AA	GG	CC	AA	TT
14._GC-01-066-4-02	CC	AG	CC	TT	CT	TT	GT	CT	CC	AA	GG	CC	AA	TT
15._GC-01-066-4-02	CC	AG	CC	TT	CT	TT	GT	CT	CC	AA	GG	CC	AA	TT
16._EET_400_[ECU]	CC	AG	CC	TT	CT	TT	GT	CT	CC	AA	GG	CC	AA	TT
17._EET_400_[ECU]	CC	AG	CC	TT	CT	TT	GT	CT	CC	AA	GG	CC	AA	TT
18._EET_400_[ECU]	CC	AG	CC	TT	CT	TT	GT	CT	CC	AA	GG	CC	AA	TT
19._EET_400_[ECU]	_	AG	CC	TT	_	TT	GT	CT	_	_	GG	CC	AA	TT
20._RUQ_760	_	AG	CC	TT	_	_	GT	_	_	_	_	CC	AA	_
21._EET_400_[ECU]_Fld#_153_Plt#_2	GG	AA	CG	AG	AG	AA	AC	_	_	AA	GG	GG	AA	AG
22._MITC-000396	GG	AA	CG	AG	AG	AG	AC	_	_	AA	GG	GG	AA	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA
1._GC-01-066-4-02	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA
2._GC-01-066-4-02	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA
3._GC-01-066-4-02	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA
4._EET_400_[ECU]	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA
5._EET_400_[ECU]	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA
6._GC-01-066-4-02	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA
7._EET_400_[ECU]	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA
8._GC-01-066-4-02	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA
9._EET_400_[ECU]	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA
10._EET_400_[ECU]	AA	CG	TT	CC	GG	GG	AA	TT	CC	GG	TT	CC	AC	AA
11._RUQ_760	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG
12._EET_400_[ECU]	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG
13._GC-01-066-4-02	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG
14._GC-01-066-4-02	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG
15._GC-01-066-4-02	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG
16._EET_400_[ECU]	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG
17._EET_400_[ECU]	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG
18._EET_400_[ECU]	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG
19._EET_400_[ECU]	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG
20._RUQ_760	_	_	_	TT	CG	GG	_	CT	AC	CG	GG	CT	AC	AG
21._EET_400_[ECU]_Fld#_153_Plt#_2	AT	GG	AG	AG	GG	AC	_	AG	AC	CG	CC	_	AC	_
22._MITC-000396	AT	CC	GG	AG	CC	CC	_	AA	AC	CG	CC	_	AC	_

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CC	GG	CC	AA	CC	GG	AA	TT	GG	X_X	X_X	X_X
1._GC-01-066-4-02	GG	AA	CC	GG	CC	AA	CC	GG	AA	TT	GG	X_X	X_X	X_X
2._GC-01-066-4-02	GG	AA	CC	GG	CC	AA	CC	GG	AA	TT	GG	X_X	X_X	X_X
3._GC-01-066-4-02	GG	AA	CC	GG	CC	AA	CC	GG	AA	TT	GG	X_X	X_X	X_X
4._EET_400_[ECU]	GG	AA	CC	GG	CC	AA	CC	GG	AA	TT	GG	X_X	X_X	X_X
5._EET_400_[ECU]	GG	AA	CC	GG	CC	AA	CC	GG	AA	TT	GG	X_X	X_X	X_X
6._GC-01-066-4-02	GG	AA	CC	GG	CC	AA	_	GG	AA	TT	GG	X_X	X_X	X_X
7._EET_400_[ECU]	GG	AA	CC	GG	CC	AA	_	GG	AA	TT	GG	X_X	X_X	X_X
8._GC-01-066-4-02	GG	AA	CC	GG	CC	AA	CT	GG	AA	TT	GG	X_X	X_X	X_X
9._EET_400_[ECU]	GG	AA	CC	GG	CC	AA	CT	GG	AA	TT	GG	X_X	X_X	X_X
10._EET_400_[ECU]	GG	AA	CC	AA	CC	AC	CT	GG	AC	AT	GG	X_X	X_X	X_X
11._RUQ_760	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X
12._EET_400_[ECU]	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X
13._GC-01-066-4-02	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X
14._GC-01-066-4-02	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X
15._GC-01-066-4-02	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X
16._EET_400_[ECU]	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X
17._EET_400_[ECU]	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X
18._EET_400_[ECU]	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X
19._EET_400_[ECU]	GG	AA	CC	AG	_	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X
20._RUQ_760	_	AA	CT	AG	CC	CC	CT	GT	AC	_	_	X_X	X_X	X_X
21._EET_400_[ECU]_Fld#_153_Plt#_2	AG	AA	AG	AG	GG	CC	AA	AC	AC	AA	CG	X_X	X_X	X_X
22._MITC-000396	AG	AA	AG	AG	GG	CC	AA	AA	CC	AT	CG	X_X	X_X	X_X

Input profile: EET_400_[ECU]

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Mars Center for Cocoa Science, Brazil

Location: 1402 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._EET_400_[ECU] GC-01-066-4-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

2._EET_400_[ECU] GC-01-066-4-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

3._EET_400_[ECU] GC-01-066-4-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

4._EET_400_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 7

Dapeng Zhang, 2016

5._EET_400_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 1 > FP

Dapeng Zhang, 2016

6._EET_400_[ECU] GC-01-066-4-02

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

7._EET_400_[ECU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 10 > F

Dapeng Zhang, 2016

8._EET_400_[ECU] GC-01-066-4-02

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._EET_400_[ECU]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 5

Dapeng Zhang, 2016

10._EET_400_[ECU]

74.4 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot85/Trial II 2B

Dapeng Zhang, 2016

11._EET_400_[ECU] RUQ_760

67.9 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._EET_400_[ECU]

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 3

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

13._EET_400_[ECU] GC-01-066-4-02

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP3

14._EET_400_[ECU] GC-01-066-4-02

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

15._EET_400_[ECU] GC-01-066-4-02

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

16._EET_400_[ECU]

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 9

Dapeng Zhang, 2016

17._EET_400_[ECU]

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 13 > F

Dapeng Zhang, 2016

18._EET_400_[ECU]

66.7 %
39 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador

Location: OCHO CASAS #1

Dapeng Zhang, 2016

19._EET_400_[ECU]

64.7 %
34 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

20._EET_400_[ECU] RUQ_760

56.3 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

21._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

29.4 %
34 shared markers

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USDA-TARS, United States of America

Location: Field: 153, Tree: 2

22._EET_400_[ECU] MITC-000396

26.5 %
34 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25